Papers

Landon Detwiler, Wolfgang Gatterbauer, Brenton Louie, Dan Suciu and Peter Tarczy-Hornoch, "Integrating and Ranking Uncertain Scientific Data". [Proceedings of 25th International Conference on Data Engineering (ICDE), pp 1235-1238, IEEE.] [PDF-paper] [PDF-technical report] [PDF-poster]

Terry H. Shen, Chris S. Carlson, and Peter Tarczy-Hornoch, "Evaluating the Accuracy of SNPit: a Functional SNP Annotation System" [In Press, BMC Bioinformatics] [PDF-paper]

Terry H. Shen, Chris S. Carlson, and Peter Tarczy-Hornoch, "SNPit: a federated data integration system for the purpose of functional SNP annotation" [Computer Methods and Programs in Biomedicine, Vol 95 (2), August 2009, pp 181-189] [PDF-paper]

Brenton Louie, Peter Tarczy-Hornoch, Roger Higdon and Eugene Kolker, "Validating Annotations for Uncharacterized Proteins in Shewanella oneidensis" [OMICS, 12 (3), September 2008, pp 211-215] [Link-paper]

Nicholas R. Anderson, E. Sally Lee, J. Scott Brockenbrough, Mark E. Minie, Sherrilynne Fuller, James Brinkley and Peter Tarczy-Hornoch, "Issues in Biomedical Research Data Management and Analysis: Needs and Barriers." [Journal of the American Medical Informatics Association, 14, pp 478-488, April 2007] [Link-paper]

Brenton Louie, Landon Detwiler, Nilesh Dalvi, Ron Shaker, Peter Tarczy-Hornoch and Dan Suciu, "Incorporating Uncertainty Metrics into a General-Purpose Data Integration System." [Proceedings of the 19th international Conference on Scientific and Statistical Database Management, pp19, 2007] [PDF-paper]

Brenton Louie, Peter Mork, Fernando Martin-Sanchez, Alon Halevy and Peter Tarczy-Hornoch, "Data Integration and Genomic Medicine". [Journal of Biomedical Informatics, Vol. 40 (1), February 2007, pp 5-16] [Link-paper]

Eithon Cadag, Brenton Louie, Peter J. Myler and Peter Tarczy-Hornoch, "BioMediator Data Integration and Inference for Function Annotation of Anonymous Sequences". [Proceedings of the Pacific Symposium on Biocomputing, 2007 pp 343-354, Maui, Hawaii] [PDF-paper] [ZIP-supplemental-materials]

Peter Mork, Ron Shaker, Peter Tarczy-Hornoch. "The Multiple Roles of Ontologies in the BioMediator Data Integration System". [Proceedings of the Data Integration in the Life Sciences Workshop, July 2005] [PDF-paper]

Kelan Wang, Peter Tarczy-Hornoch, Ron Shaker, Peter Mork and James Brinkley "BioMediator Data Integration: Beyond Genomics to Neuroscience Data". [AMIA Fall 2005 Symposium Proceedings 779-783, 2005] [PDF-paper]

Ron Shaker, Peter Mork, J. Scott Brockenbrough, Loren Donelson, Peter Tarczy-Hornoch. "The BioMediator System as a Tool for Integrating Biologic Databases on the Web". [Proceedings of the Workshop on Information Integration on the Web, held in conjunction with VLDB 2004, August 2004] [PDF-paper]

Loren Donelson, Peter Tarczy-Hornoch, Peter Mork, Cindy Dolan, Joyce Mitchell, M. Barrier and Hao Mei, "The BioMediator System as a Data Integration Tool to Answer Diverse Biologic Queries". [Medinfo. 768-72, 2003] [PDF-paper]

Hao Mei, Peter Tarczy-Hornoch, Peter Mork, Anthony J Rossini, Ron Shaker, and Loren Donelson. "Expression Array Annotation Using the BioMediator Biologic Data Integration System and the Bioconductor Analytic Platform". [AMIA Symposium, November 2003] [PDF-paper]

Ron Shaker, Peter Mork, Matt Barclay, and Peter Tarczy-Hornoch. "A Rule Driven Bi-Directional Translation System for Remapping Queries and Result Sets Between a Mediated Schema and Heterogeneous Data Sources". [AMIA Symposium, November 2002] [PDF-paper]

Peter Mork, Ron Shaker, Alon Halevy, and Peter Tarczy-Hornoch. "PQL: A Declarative Query Language over Dynamic Biological Schemata". [AMIA Symposium, November 2002] [PDF-paper]

Peter Mork, Alon Halevy and Peter Tarczy-Hornoch, "A Model for Data Integration Systems of Biomedical Data Applied to Online Genetic Databases". [Jour Amer Med Inform Assoc, Fall Symposium Suppl, 473-477, 2001] [PDF-paper]

Robin McEntire, C. Goble, R. Stevens, Eric Neuman, P. Matuszek, Terence Critchlow and Peter Tarczy-Hornoch, "A Marketplace for Ontologies and Ontology-Based Tools and Applications in the Life Sciences". [Objects in Bio- & Chem-Informatics 2001. Danvers, MA, July 9-10, 2001] [PDF-paper]

Robin McEntire, Peter Karp, Neil Abernethy, Frank Olken, Robert E. Kent, Matt DeJongh, Peter Tarczy-Hornoch, David Benton, Dhiraj Pathak, Gregg Helt, Suzanna Lewis, Anthony Kosky, Eric Neumann, Dan Hodnett, Luca Tolda and Thodros Topaloglou, "An Evaluation of Ontology Exchange Languages for Bioinformatics". [Intelligent Systems for Molecular Biology, 2000;8:239-50] [PDF-paper]

Posters

Eithon Cadag, Peter Tarczy-Hornoch, Peter J. Myler, "Learning Pathogenic Proteins across Fractured and Heterogeneous Data". [AMIA Fall 2008 Symposium Proceedings, 2008] [PDF-poster] [PDF-abstract]

Brenton Louie, Peter Mork, Ron Shaker, N. Kolker, Eugene Kolker and Peter Tarczy-Hornoch, "Integration of Data for Gene Annotation Using the BioMediator System". [AMIA Fall Symposium 2005] [PPT-poster]

Sophia Jeng, Kelan Wang, Janos Barbero, James Brinkley and Peter Tarczy-Hornoch, "A Pilot Bridging Data Integration and Analytics: BioMediator and R". [AMIA Fall Symposium 2005] [PPT-poster]

Other National Presentations

"Models for Data Integration in Biomedical Research", Peter Tarczy-Hornoch [March 23, 2004, Univ. of Utah, Salt Lake City, UT]

"Models for Biological Data Integration and Analysis", Peter Tarczy-Hornoch [September 16, 2003, NSF Information and Data Management 2003 Workshop, Seattle WA]

"Integrating Genomic and Microarry Data to Promote New Medical Discoveries through Clinical Trials", Peter Tarczy-Hornoch (Panelist). [Fall 2003 Meeting, Washington D.C]