Papers

Cadag, E., Louie, B., Myler, P., Tarczy-Hornoch, P., "BioMediator Data Integration and Inference for Function Annotation of Anonymous Sequences". [Submitted to Pacific Symposium on Biocomputing, 2007, Maui, Hawaii] [ZIP-supplemental-materials]

Peter Mork, Ron Shaker, Peter Tarczy-Hornoch. "The Multiple Roles of Ontologies in the BioMediator Data Integration System". [Proceedings of the Data Integration in the Life Sciences Workshop, July 2005] [PDF-paper]

Wang, K, Tarczy-Hornoch, P, Shaker, R, Mork, P, Brinkley, J. "BioMediator Data Integration: Beyond Genomics to Neuroscience Data". [AMIA Fall 2005 Symposium Proceedings 779-783, 2005] [PDF-paper]

Ron Shaker, Peter Mork, J. Scott Brockenbrough, Loren Donelson, Peter Tarczy-Hornoch. "The BioMediator System as a Tool for Integrating Biologic Databases on the Web". [Proceedings of the Workshop on Information Integration on the Web, held in conjunction with VLDB 2004, August 2004] [PDF-paper]

Donelson, L, Tarczy-Hornoch, P, Mork, P, Dolan, C, Mitchell, JA, Barrier, M, Mei, H. "The BioMediator System as a Data Integration Tool to Answer Diverse Biologic Queries". [Medinfo. 768-72, 2003] [PDF-paper]

Hao Mei, Peter Tarczy-Hornoch, Peter Mork, Anthony J Rossini, Ron Shaker, and Loren Donelson. "Expression Array Annotation Using the BioMediator Biologic Data Integration System and the Bioconductor Analytic Platform". [AMIA Symposium, November 2003] [PDF-paper]

Ron Shaker, Peter Mork, Matt Barclay, and Peter Tarczy-Hornoch. "A Rule Driven Bi-Directional Translation System for Remapping Queries and Result Sets Between a Mediated Schema and Heterogeneous Data Sources". [AMIA Symposium, November 2002] [PDF-paper]

Peter Mork, Ron Shaker, Alon Halevy, and Peter Tarczy-Hornoch. "PQL: A Declarative Query Language over Dynamic Biological Schemata". [AMIA Symposium, November 2002] [PDF-paper]

Mork, P, Halevy, A, Tarczy-Hornoch, P. "A Model for Data Integration Systems of Biomedical Data Applied to Online Genetic Databases". [Jour Amer Med Inform Assoc, Fall Symposium Suppl, 473-477, 2001] [PDF-paper]

McEntire, R, Goble, C, Stevens, R, Neuman, E, Matuszek, P, Crichlow, T, Tarczy-Hornoch, P. "A Marketplace for Ontologies and Ontology-Based Tools and Applications in the Life Sciences". [Objects in Bio- & Chem-Informatics 2001. Danvers, MA, July 9-10, 2001] [PDF-paper]

McEntire R, Karp P, Abernethy N, Olken F, Kent RE, DeJongh, M, Tarczy-Hornoch, P, Benton D, Pathak D, Helt G, Lewis, S, Kosky A, Neumann E, Hodnett D, Toldo L, Topaloglou T. "An Evaluation of Ontology Exchange Languages for Bioinformatics". [Intelligent Systems for Molecular Biology, 2000;8:239-50] [PDF-paper]

Louie, B, Mork, P, Martin-Sanchez, F, Halevy, A, Tarczy-Hornoch, P. "Data Integration and Genomic Medicine". [In Press Journal of Biomedical Informatics] [Link-paper]

Posters

Louie, B, Mork, P, Shaker, R, Kolker, N, Kolker, E, Tarczy-Hornoch, P. "Integration of Data for Gene Annotation Using the BioMediator System". [AMIA Fall Symposium 2005] [PPT-poster]

Jeng, S, Wang, K, Barbero, J, Brinkley, J, Tarczy-Hornoch, P. "A Pilot Bridging Data Integration and Analytics: BioMediator and R". [AMIA Fall Symposium 2005] [PPT-poster]

Other National Presentations

"Models for Data Integration in Biomedical Research", Tarczy-Hornoch, P. [March 23, 2004, Univ. of Utah, Salt Lake City, UT]

"Models for Biological Data Integration and Analysis", Tarczy-Hornoch, P. [September 16, 2003, NSF Information and Data Management 2003 Workshop, Seattle WA]

"Integrating Genomic and Microarry Data to Promote New Medical Discoveries through Clinical Trials", Tarczy-Hornoch, P. Panelist. [Fall 2003 Meeting, Washington D.C]